PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG473800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 741aa    MW: 83914.9 Da    PI: 7.6501
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG473800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.54.4e-17181061297
                          HTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3  12 ksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          ++ r+ +p+ f+ ++        g+  ++s  + l++ +g++W v l  +  +gr++lt+GW++Fv+ n L+ g+f+v+++dg++ f   
  Pavir.5NG473800.1.p  18 AR-RIEIPRGFLCHIpeerrrtsGSTVASSANVALKNAEGKTWPVGL--DEIDGRMFLTTGWSKFVEGNCLRKGEFLVIEYDGNMHF--G 102
                          43.5889999997779888888877778999****************..**********************************9888..5 PP

                          EEEE CS
                   B3  94 vkvf 97 
                          v+vf
  Pavir.5NG473800.1.p 103 VSVF 106
                          5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-194108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-195113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.9156109IPR003340B3 DNA binding domain
CDDcd100173.17E-197106No hitNo description
SMARTSM010191.6E-159109IPR003340B3 DNA binding domain
PfamPF023621.7E-1318103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MEGQRRPRFF KVLVGDFARR IEIPRGFLCH IPEERRRTSG STVASSANVA LKNAEGKTWP  60
VGLDEIDGRM FLTTGWSKFV EGNCLRKGEF LVIEYDGNMH FGVSVFGVNT VEKAVWPSGS  120
GAQVTRSLGE QPCDIFPSSK KGCCGDEMTE TVKSPMHSHA QTVTTERSTH GDEHISSPDT  180
IGFLDLHEVG CSKDELETCL SRKEPMEDDK AKAIAEAMRT LHVDKLAIEL FCATLCLYKW  240
KVEVAAEDLN ICRGKLNILE QSMKQKLVLL FDFIKRQLQR FFPPDDDFER IKKNNLEGPN  300
LSNQPLQSDL TVPPVKRRLV DESEPCDLSQ KQKRKIVKLQ RGSPQTQTPR RSPRLVHLNN  360
TCNSTNKVLK KRAEVRRPPA AIIQVKHREH KSCSLHKKPY NALTTAREET TGSLYQDLRN  420
LDSPQYEVGL SKVHDHDQGE TRKMLDHSDD GKNSKEQMEI NAVEISGSFL STGCIESPPN  480
NSGLTACSRK CDLSFIWKHP PHVNPLEKIL LDIQRDNFVK TIASIQEIIR DDPSDVLSAD  540
VIEAAVRIGI LKCDLSLQDR NAQKIVNALL EYSKKIKEKK NFNIEMRKEE FSAKLQDLLK  600
WQLKELETAY TCLESDYKKA AADSTNLFST LEEHRKKLHA VKDGIKDMQQ DLIIEDEIQN  660
LAHKVAEHET IYQKSILEKV RVKMDLKSYQ QTLGDVKERL ASTEPGSVDV EALVKIEMDN  720
MSKEIQLSKG ILLNINFKKE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG473800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816069.10.0B3 domain-containing protein Os03g0120900-like
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A2T7DHD30.0A0A2T7DHD3_9POAL; Uncharacterized protein
STRINGPavir.Eb02932.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.18e-14B3 family protein