PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG443900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 350aa MW: 36796.9 Da PI: 10.1728 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.1 | 1.6e-13 | 202 | 248 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++Pk + K++Ka+ L A+ YI++L+ Pavir.5NG443900.1.p 202 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 248 799***********************66......****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.8E-17 | 1 | 95 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.047 | 198 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.39E-15 | 201 | 251 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-16 | 201 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-16 | 201 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-11 | 202 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.1E-16 | 204 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MYFLASMYFS FPEGAGGPGH ALASGRHAWV AVDPGPRGAG AGAGEAAPGW YVRASLAQSA 60 GLRTVVFLPC KGGVLELGSD VAVRETPEAL RVIQSALAVA PPAAREERMR IFGKDLSPSG 120 RAPRPQPMGL VVAGDNWAPQ LGGHAAASAP AANKEAAKPK PPEPPRSIDF TKPGKAGQAG 180 GEERRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPKISK MDKASLLSDA 240 IAYIQELEDR LRGCAAGAGA RAESPAVEVK TMQDEVVLRV TTPLYAHPVS RVFHAIRDAQ 300 LSVAASDVAV ADDAVTHTLV LRSPGPEQLT AETVLAAMSR GMTSATPSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-26 | 196 | 284 | 2 | 82 | Transcription factor MYC2 |
5gnj_B | 2e-26 | 196 | 284 | 2 | 82 | Transcription factor MYC2 |
5gnj_E | 2e-26 | 196 | 284 | 2 | 82 | Transcription factor MYC2 |
5gnj_F | 2e-26 | 196 | 284 | 2 | 82 | Transcription factor MYC2 |
5gnj_G | 2e-26 | 196 | 284 | 2 | 82 | Transcription factor MYC2 |
5gnj_I | 2e-26 | 196 | 284 | 2 | 82 | Transcription factor MYC2 |
5gnj_M | 2e-26 | 196 | 284 | 2 | 82 | Transcription factor MYC2 |
5gnj_N | 2e-26 | 196 | 284 | 2 | 82 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 191 | RRPRKRGRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.2635 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG443900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968015 | 0.0 | EU968015.1 Zea mays clone 312846 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819579.1 | 0.0 | transcription factor bHLH13-like | ||||
TrEMBL | A0A3L6SLM1 | 0.0 | A0A3L6SLM1_PANMI; Transcription factor bHLH13-like | ||||
STRING | Pavir.J12952.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7385 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 7e-44 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG443900.1.p |