PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG440100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 316aa    MW: 33352.7 Da    PI: 7.2481
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG440100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W++eEde l+++++ +G g+W++++r  g+ R++k+c++rw +yl
  Pavir.5NG440100.2.p 14 RGLWSPEEDETLIKYITTHGHGCWSSVPRQAGLQRCGKSCRLRWINYL 61
                         788*******************************************97 PP
2Myb_DNA-binding51.52.4e-1667110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+++++E+ l++++++ lG++ W+ Ia++++ gRt++++k++w++
  Pavir.5NG440100.2.p  67 RGSFSQQEEALIIELHRVLGNR-WAQIAKHLP-GRTDNEVKNFWNS 110
                          899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.066961IPR017930Myb domain
SuperFamilySSF466893.56E-2912108IPR009057Homeodomain-like
SMARTSM007171.0E-121363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001671.25E-111761No hitNo description
PROSITE profilePS5129426.48662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2665117IPR009057Homeodomain-like
SMARTSM007171.3E-1666114IPR001005SANT/Myb domain
PfamPF002494.0E-1567110IPR001005SANT/Myb domain
CDDcd001673.12E-1269109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGHHSCCNKQ KVRRGLWSPE EDETLIKYIT THGHGCWSSV PRQAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SQQEEALIIE LHRVLGNRWA QIAKHLPGRT DNEVKNFWNS TIKKKLISQA  120
VGSLHPDLYY NILDGAGQGM AAAGCAPLNG ADNAAALQAV TLSPQSPPPM AHNPAAAWAD  180
FVSQPLFLPG NNGVLGGGGN DLHQYGVDGD FIKLCRAVDA FPPPESGPGG VASQCKPAAD  240
LVAQQDEGAA AAVRSLPVFL EPKGGAGAFA ADPAMGPVMD FMEAILGSSS TSAVSASSVD  300
SFSASTGMQS HCWIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG440100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9587340.0EU958734.1 Zea mays clone 1711992 MYB9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969714.10.0transcription factor MYB86 isoform X2
TrEMBLK3XK960.0K3XK96_SETIT; Uncharacterized protein
STRINGPavir.J21520.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.29e-76myb domain protein 26