PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.5NG440100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 318aa MW: 33494.9 Da PI: 7.2481 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 3.9e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde l+++++ +G g+W++++r g+ R++k+c++rw +yl Pavir.5NG440100.1.p 14 RGLWSPEEDETLIKYITTHGHGCWSSVPRQAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.4e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l++++++ lG++ W+ Ia++++ gRt++++k++w++ Pavir.5NG440100.1.p 67 RGSFSQQEEALIIELHRVLGNR-WAQIAKHLP-GRTDNEVKNFWNS 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.066 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.28E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.486 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.19E-12 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 318 aa Download sequence Send to blast |
MGHHSCCNKQ KVRRGLWSPE EDETLIKYIT THGHGCWSSV PRQAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SQQEEALIIE LHRVLGNRWA QIAKHLPGRT DNEVKNFWNS TIKKKLISQA 120 VGSLHPAADL YYNILDGAGQ GMAAAGCAPL NGADNAAALQ AVTLSPQSPP PMAHNPAAAW 180 ADFVSQPLFL PGNNGVLGGG GNDLHQYGVD GDFIKLCRAV DAFPPPESGP GGVASQCKPA 240 ADLVAQQDEG AAAAVRSLPV FLEPKGGAGA FAADPAMGPV MDFMEAILGS SSTSAVSASS 300 VDSFSASTGM QSHCWIP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 14 | 116 | 7 | 108 | B-MYB |
1gv2_A | 2e-30 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-30 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-30 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.5NG440100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU958734 | 1e-169 | EU958734.1 Zea mays clone 1711992 MYB9 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969713.1 | 0.0 | myb-related protein Hv1 isoform X1 | ||||
TrEMBL | A0A368RAA2 | 0.0 | A0A368RAA2_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J21520.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12813 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13890.2 | 6e-76 | myb domain protein 26 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.5NG440100.1.p |