PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG426000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 320aa    MW: 34895.2 Da    PI: 8.894
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG426000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.74.9e-32662061128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 
                          lp+G++F+Ptd+e++ e+L+ k++ +       ++++   i+   +i++++P++Lp  v ++    +fF++ +k+y+tg+rk+r+++   
  Pavir.5NG426000.1.p  66 LPAGVKFDPTDQEML-EHLEGKARPDArklhplIDEFIPtIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHtde 153
                          799************.99****998885665443333333665557**********.555555677******************744456 PP

                  NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             + +W++tgk+++v++ +g l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Pavir.5NG426000.1.p 154 qggETRWHKTGKTRPVFT-NGMLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 206
                          555778************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-3758225IPR003441NAC domain
PROSITE profilePS5100532.59666225IPR003441NAC domain
PfamPF023652.5E-1467206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLATA AAVAAAKKQQ QASSHVNLIR TCPSCGHRAQ YEQLQAAATI  60
QDLPGLPAGV KFDPTDQEML EHLEGKARPD ARKLHPLIDE FIPTIEGENG ICYTHPERLP  120
GVGKDGLIRH FFHRPSKAYT TGTRKRRKVH TDEQGGETRW HKTGKTRPVF TNGMLKGYKK  180
ILVLYTNYGK QRKPEKTNWV MHQYHLGSDE EEKDGELVVS KVFYQTQPRQ CGSGSATTAK  240
DVVPLAASAA TPTDHHHHHD GGSGGSNSML KEAAGIVDFY SPVALIGYNQ AAPNNRAAAS  300
AHLMPNFEVH TAGAAGFGP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.32270.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG426000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0549450.0BT054945.1 Zea mays full-length cDNA clone ZM_BFc0091A12 mRNA, complete cds.
GenBankBT0629760.0BT062976.1 Zea mays full-length cDNA clone ZM_BFc0013H24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814631.10.0NAC domain-containing protein 73-like isoform X1
SwissprotO494591e-124NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2T7DIP10.0A0A2T7DIP1_9POAL; Uncharacterized protein
STRINGPavir.Eb02718.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-124NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]