PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG424100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 547aa    MW: 55787.7 Da    PI: 7.7871
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG424100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.11.1e-1669129257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          ++R+++++eq+++Le+ F++   +p ++e+ ++ ++l    ++ +++V++WFqNr+ + k+
  Pavir.5NG424100.1.p  69 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIPRIRMRLleygQVGDANVFYWFQNRKSRSKN 129
                          89*****************99*************************************995 PP
2Wus_type_Homeobox108.15.4e-3568130264
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                          +++RW+P+peQi+iLe++++sG+++P+++ei ri+++L eyG+++d+NVfyWFQNrk+R+++k
  Pavir.5NG424100.1.p  68 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIPRIRMRLLEYGQVGDANVFYWFQNRKSRSKNK 130
                          579**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-1063132IPR009057Homeodomain-like
PROSITE profilePS5007110.02565130IPR001356Homeobox domain
SMARTSM003895.5E-567134IPR001356Homeobox domain
CDDcd000861.85E-668130No hitNo description
Gene3DG3DSA:1.10.10.607.2E-668132IPR009057Homeodomain-like
PfamPF000462.6E-1469128IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MASSFNNRHW PSMFRSKHAA EPWQAQPDIS GSPPPFLSGG GNATSAAGSG LKHPSSGFAG  60
GEERTPDPKP RWNPKPEQIR ILEAIFNSGM VNPPRDEIPR IRMRLLEYGQ VGDANVFYWF  120
QNRKSRSKNK LRTAGTARAP ARGVAAAAPV VATPPAVQAP QQLLTQQVQL LPSPAQAPTS  180
SSSSSSDRSS GSSRPAAKRA AQEMSSTAAM DLLGPLAAAW PQMYYQGQPV APTSAPAHKV  240
QNLVSSDEPI FQPWQQGYCL SAAEVAAIIA GQYMPVPVQQ QPPPSLPAGA FLGLCNEVTG  300
PAITGQRNCA WGAGLGQYCT GGGSADHHQL ELSKNTTTAA AANAVAREVA HEDSTKLGLL  360
PYCFGDSTAV DAASVAATSP LAATPDAAVT VASVAASTAG LAGLPASTVV PNGVVASYDL  420
LQLQGLAADG ALGVGAVTTT TTGAAACAAA AVSAAAAAPS APTGARAHAL QEGGVAALCV  480
TDTATGKSVA HTVAAARLDV RAQFGEAAVL FRCAGERGLD IEQVPVDASG RTVQPLQHGA  540
FYYVLV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG424100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557941e-129BT055794.1 Zea mays full-length cDNA clone ZM_BFb0196O06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819605.10.0WUSCHEL-related homeobox 7-like
SwissprotQ0JKK61e-108WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBLA0A2S3HTC80.0A0A2S3HTC8_9POAL; Uncharacterized protein
STRINGPavir.Eb02702.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.17e-43homeobox-3