PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG422000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 398aa    MW: 41053.8 Da    PI: 7.5842
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG422000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.52.8e-33201258259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+
  Pavir.5NG422000.1.p 201 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 258
                          8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-34185258IPR003657WRKY domain
SuperFamilySSF1182902.75E-29192259IPR003657WRKY domain
PROSITE profilePS5081131.387195260IPR003657WRKY domain
SMARTSM007742.6E-39200259IPR003657WRKY domain
PfamPF031062.0E-26201258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSSGEFHFHD ELASLFAQRP AAPGPGDMMA QQQQQAPASW FADYYLHAGA PGVGMDYDLL  60
CRALDLPVPG DVVVKRELLV VDTGGGGGGF AAPTPTPSGG GTAPVTPNTT SSMSSSSSEA  120
AGGGGGGGGG GGGFGAVEEG SLKKEEGEEG EESKELGGKG EDDAGKSKKG AAAGKAKGKG  180
EKRQRQPRFA FMTKSEVDHL EDGYRWRKYG QKAVKNSPYP RSYYRCTTQK CPVKKRVERS  240
YQDPAVVITT YEGKHTHPIS ATLRGSTHLL AAQLHHHHHA GAGGHHLGGA FPPLPQMGAP  300
FGRPGVGGGV IDVLGLLPPR DAHNHHTVPP AIGLASSQGM SGPMSTVAGA TTAAATTTAS  360
SSPPSLQMQH FMAQDFGLLQ DMLPPPFVHS NGGNIQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-26191261878Probable WRKY transcription factor 4
2lex_A2e-26191261878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG422000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0681160.0BT068116.1 Zea mays full-length cDNA clone ZM_BFb0045M20 mRNA, complete cds.
GenBankKJ7275430.0KJ727543.1 Zea mays clone pUT5403 WRKY transcription factor (WRKY95) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969457.11e-179probable WRKY transcription factor 48
TrEMBLA0A3L6R1F51e-180A0A3L6R1F5_PANMI; Putative WRKY transcription factor 48
STRINGPavir.Eb02690.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-47WRKY DNA-binding protein 71