PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG419300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 89aa    MW: 10007 Da    PI: 7.6779
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG419300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.2e-091761344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                          W++ E +l+ +a + +G +   +W++++r +g  +t+ +++ ++
  Pavir.5NG419300.1.p 17 TWSKKENKLFEEALAYYGDDtpdRWHKVSRAIGGSKTADEVRRHY 61
                         7*****************99*************99*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-111367IPR009057Homeodomain-like
PROSITE profilePS5129311.6231369IPR017884SANT domain
SMARTSM007172.4E-61467IPR001005SANT/Myb domain
PfamPF002491.1E-71761IPR001005SANT/Myb domain
CDDcd001671.57E-51764No hitNo description
Gene3DG3DSA:1.10.10.601.0E-41766IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSGSRSSSSR SVNVDSTWSK KENKLFEEAL AYYGDDTPDR WHKVSRAIGG SKTADEVRRH  60
YELLDEDVKL ILSGNVPFPK YNTQGPWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-2418851177RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.257001e-131leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG419300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818573.12e-49protein RADIALIS-like 3
SwissprotQ6NNN06e-25RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A2S3HT794e-48A0A2S3HT79_9POAL; Uncharacterized protein
TrEMBLA0A2T7DIT34e-48A0A2T7DIT3_9POAL; Uncharacterized protein
STRINGPavir.Eb02679.1.p2e-59(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-25RAD-like 1