PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG419100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 235aa MW: 23735.4 Da PI: 7.7552 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 65.8 | 4.8e-21 | 118 | 152 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgtt+TplWR+gp+g+k+LCnaCG++++k+++ Pavir.5NG419100.1.p 118 CANCGTTSTPLWRNGPRGPKSLCNACGIRFKKEER 152 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.28E-14 | 110 | 152 | No hit | No description |
PROSITE profile | PS50114 | 14.655 | 112 | 148 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 8.2E-21 | 112 | 165 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.4E-17 | 116 | 152 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.76E-14 | 117 | 149 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 118 | 143 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.3E-18 | 118 | 152 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MLHEAVPCTC GLLYGTCGGG CSLLFAASEG SHRSQYYERC GGGGKEAGFG AAGSYGGSVD 60 CTLSLGTSST RRAEAAGAPR APPAPSGALP WPEAPPVPSC NSGSSHYGAA EANNARRCAN 120 CGTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRAAAAAAA PAAVASDGGV EYASYGYARQ 180 PQQWGCYGPA SFGVFGDAAG EVGGPCLPWG LGVMPASSPE FGAAREMPSL FQYY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG419100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU722206 | 2e-46 | GU722206.1 Hordeum vulgare subsp. vulgare cultivar Bowman third outer glume (TRD) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815390.1 | 1e-103 | GATA transcription factor 15-like | ||||
TrEMBL | A0A3L6SU77 | 1e-109 | A0A3L6SU77_PANMI; GATA transcription factor 20-like | ||||
STRING | Pavir.Eb02678.1.p | 1e-129 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 3e-17 | GATA transcription factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG419100.1.p |