PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG417300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 442aa    MW: 50824.9 Da    PI: 4.8536
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG417300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.28.6e-16170250190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn Y+ e+GF +  ++ + ++++    +++ +C + g++++ +           ++++ Cka++k+ +++d+ w+++++++eHnHela
  Pavir.5NG417300.1.p 170 EFYNMYSWEIGFGIIYNRRRMNDDKSYRSMQEICCHQGGSDSRVQA---------GTKKVRCKARIKLLRTDDDGWYISEFVKEHNHELA 250
                          6**************9999988666656666666666666555444.........5899*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-12170250IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MSDAEEAELN QCNDYNAVHE YVASFSDDIA SEEFVRIVDD YNVGGGFCVN GDITEIDDDF  60
SEKNQQEFEQ FAEQEEGNHY SDADYNLQSD QDVPSCDLGD CGCVTIELAQ EICPKYLEVE  120
TIGYKKRQRA RKGAVRSNCR NPRDMGAIEI ALRTSGNRKN QPIFEPEARE FYNMYSWEIG  180
FGIIYNRRRM NDDKSYRSMQ EICCHQGGSD SRVQAGTKKV RCKARIKLLR TDDDGWYISE  240
FVKEHNHELA ESYAEKRECP SHKQLDQNTL DMIRYLREND VSQTKVRCII SRMFGSLGDA  300
PCTKRSVRTI CNQLKREQMD NDVIKKIEIF KEMKEKDPGF QWSVELGENS TIKTLMWCSG  360
KSRAQYSCFG DVITFDTTYC TNFYNMPFGL FVGVNNHFQS IIYAGVLIIE LHAPTRFELE  420
TFGFDTILSC MHRPVQPKSL S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG417300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Z5RIX11e-109A0A1Z5RIX1_SORBI; Uncharacterized protein
STRINGPavir.Eb02571.1.p1e-167(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-27FAR1-related sequence 5