PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG412100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 294aa    MW: 31181.6 Da    PI: 8.2269
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG412100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.67e-21231548126
                  NAM   8 hPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk...sgyW 83 
                          hP++eel++ +L++++ + +       ++  +i+++d+y++ P +L +      + ++++ wyfFs+ + k+++g+rk r++    +g W
  Pavir.5NG412100.1.p  23 HPSEEELITSFLRPRLGDGSggapcpRPC-AFIHDADVYSAGPDELTRgfdpaVAGNGDSAWYFFSPVRAKNREGQRKARTVGsgeEGCW 111
                          9***************9999888864333.57**************85567755566888********************866445889* PP

                  NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                          ++    ++vl+  g+  g +k++ f ++   + +++ W+m e 
  Pavir.5NG412100.1.p 112 HSEAGARAVLDGAGRCLGHRKSFSFVTKAGGRRVRSGWLMVEL 154
                          ***********9**************9999999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3012170IPR003441NAC domain
PROSITE profilePS5100527.10416170IPR003441NAC domain
PfamPF023659.0E-1318154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MVVATRRTTA ARPPPPPPDL AAHPSEEELI TSFLRPRLGD GSGGAPCPRP CAFIHDADVY  60
SAGPDELTRG FDPAVAGNGD SAWYFFSPVR AKNREGQRKA RTVGSGEEGC WHSEAGARAV  120
LDGAGRCLGH RKSFSFVTKA GGRRVRSGWL MVELGLGDAH DVALCKIYFS PRARANGGAA  180
AYASSSAGRK RKQAAAAAAD DYPAASPRQR HRGRRPTEVR DDAVTAGAES TQDGGGHADE  240
SSSDSDDGPD RLMKEHGIVD RSDEELQKTL GLDKVIKLLN RDYGDSLLFK PSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208214QRHRGRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG412100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657827.11e-70uncharacterized protein LOC103637404
TrEMBLA0A2S3HSV81e-137A0A2S3HSV8_9POAL; Uncharacterized protein
STRINGPavir.Eb02738.1.p1e-169(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.25e-15NAC domain containing protein 47