PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG411100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 326aa    MW: 34547.6 Da    PI: 9.6952
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG411100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.57.9e-10225251127
                          XXXXCHHHCHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkae 27 
                          +ke+krerrkq+NRe+ArrsR+RK+++
  Pavir.5NG411100.1.p 225 DKESKRERRKQSNRESARRSRLRKQEK 251
                          689**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-29193IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1702.0E-6222253No hitNo description
SMARTSM003380.0063225289IPR004827Basic-leucine zipper domain
PfamPF001704.0E-7226251IPR004827Basic-leucine zipper domain
CDDcd147021.58E-11230254No hitNo description
PROSITE patternPS000360232247IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGHDEAVVTQ NSVKAPSPPK DQPAIYPCLD WSAMQAYYGP GVLPPTFFNP GIASGHVPPP  60
FMWGPQNMPP AAFGKPYAAI YPHGGAFLHP FMPLVVNPLS AEPAKSVNSK DNSLSKKLKE  120
IDGTAISTGS GNSEKTSGDY SLEGSSDGNN QKVSGTPKKR SLDDRTTSGE TCRASVPNEK  180
PGEPGRLATL SNVRITDAAI KPCVSTGSDF RVSVAPSTEW QAKDDKESKR ERRKQSNRES  240
ARRSRLRKQE KFADSASDEE AQVAAPDRQG RQAAAAPPPA RVVKNFLSMM DGAGASRGGR  300
VEHGAPRLRQ LLDSGPLAAD AVATS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241247RRSRLRK
2241248RRSRLRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG411100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817312.10.0G-box-binding factor 3-like
TrEMBLA0A3L6SPI70.0A0A3L6SPI7_PANMI; G-box-binding factor 3-like
STRINGPavir.Eb01801.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.15e-27G-box binding factor 3