PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG394500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 343aa MW: 37125.2 Da PI: 5.4018

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG394500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	22.4	3.3e-07	21	134	28	127
NAM 28 leleevikevdiykvePwdLpk...........kvkaeekewyfFskrdkkyatgk....rknr.atksgyWkatgkdkevlskkgelvg 101 +++ +++++++++++ P dL + ++ ++ wyf+++++ k+++gk r++ a ++ W++ + k+v+ ++ Pavir.5NG394500.1.p 21 VDF-TFVHRFGVCSAAPADLVAnlepvpgtdlaGDDGYSSVWYFYCPKRYKNTQGKpsghRQRAiAGGDACWHSETRPKPVKG-LAGATL 108 444.6799999*******7446777877543111234599****999766555244443344778********98.333344 PP NAM 102 lkktLvfy..kgrapkgektdWvmheyr 127 + L + +g++++ ++ W++ ey Pavir.5NG394500.1.p 109 C--NLSYGrkEGSSRSFNRLGWCLTEYD 134 4..4555433788888899999999996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	12.683	1	150	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-11	14	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MAKADDASSV ALLRGLRSGA VDFTFVHRFG VCSAAPADLV ANLEPVPGTD LAGDDGYSSV 60 WYFYCPKRYK NTQGKPSGHR QRAIAGGDAC WHSETRPKPV KGLAGATLCN LSYGRKEGSS 120 RSFNRLGWCL TEYDEEAGDD GHVLCKVYRS SSSLAKGKLK ASSSTSTNPT STEQAAAQCS 180 SASKRKATAD HPQARPSKIS HAQACASNYS FVDQEFYHQM QEPLLTEDQM GMTMPVCVDY 240 ESLFPAEEEQ LLQNTLALVA AEEEQSQQNT LVSAEEEQLQ QNTLAIAEEQ LRQNTPFTMD 300 GLLGSPGYGE YGGCSWSTQV TMDELFSRSS GCHGRGHLCR VL*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MAKADDASSV ALLRGLRSGA VDFTFVHRFG VCSAAPADLV ANLEPVPGTD LAGDDGYSSV  60
WYFYCPKRYK NTQGKPSGHR QRAIAGGDAC WHSETRPKPV KGLAGATLCN LSYGRKEGSS  120
RSFNRLGWCL TEYDEEAGDD GHVLCKVYRS SSSLAKGKLK ASSSTSTNPT STEQAAAQCS  180
SASKRKATAD HPQARPSKIS HAQACASNYS FVDQEFYHQM QEPLLTEDQM GMTMPVCVDY  240
ESLFPAEEEQ LLQNTLALVA AEEEQSQQNT LVSAEEEQLQ QNTLAIAEEQ LRQNTPFTMD  300
GLLGSPGYGE YGGCSWSTQV TMDELFSRSS GCHGRGHLCR VL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG394500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463549.1	8e-51	uncharacterized protein LOC8079646
TrEMBL	A0A2T7BZK1	0.0	A0A2T7BZK1_9POAL; Uncharacterized protein
STRING	Pavir.Fb02148.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4574	6	32

Link Out ? help Back to Top
Phytozome	Pavir.5NG394500.1.p