PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG394200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 27123.8 Da PI: 8.4711 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.7e-11 | 135 | 182 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++YI+sLq Pavir.5NG394200.1.p 135 SHSLAERARREKISERMKVLQDLVPGC----NKVIGKASVLDEIINYIQSLQ 182 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.77E-18 | 129 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.62E-12 | 129 | 186 | No hit | No description |
PROSITE profile | PS50888 | 16.406 | 131 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-18 | 131 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.3E-9 | 135 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-11 | 137 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDPAPAVAAE LWRPPHLAAG GGRAVEATSA VTEKSSGGRG GGSAGRRRQR ETPSSEDDSS 60 RNVSTSGGGG QDLTDSGAKR FKSNKSNDNN GNLRTEAETD SRSAGKAVSK NSPAPEPPKQ 120 DYIHVRARRG QATDSHSLAE RARREKISER MKVLQDLVPG CNKVIGKASV LDEIINYIQS 180 LQCQVEFLSM KLEAVNAHAS NGVEAFPCKD FASQTYSTAP GLTFDTQTPR EYGQGASTSE 240 WLHMQTGGAY ERVS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.41462 | 0.0 | callus| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG394200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796030.1 | 1e-168 | transcription factor BHLH089-like | ||||
Swissprot | Q84T08 | 1e-117 | BH089_ORYSJ; Transcription factor BHLH089 | ||||
TrEMBL | A0A2S3IH30 | 1e-167 | A0A2S3IH30_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05386.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3065 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 1e-67 | BIG PETAL P |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG394200.1.p |
Publications ? help Back to Top | |||
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