PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG389600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 761aa MW: 87444.2 Da PI: 9.4236 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 57.3 | 5.1e-18 | 87 | 166 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +f+n Y+ e+GF vr +s+k+ ++g +t+++ vCs+eg+++++++ a+ rtgCka++++ +++d+ w++++++++HnH+++ Pavir.5NG389600.1.p 87 DFFNLYSWEIGFGVRFGRSNKN-NKGYTTRQDIVCSCEGSPRHDNS---------ASVRTGCKAMVRLLRTSDHGWYISRVDTNHNHKFS 166 6********************9.7788*************999765.........59******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-14 | 87 | 166 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.1E-28 | 288 | 380 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 3.5E-5 | 569 | 602 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.126 | 569 | 604 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0017 | 579 | 606 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 761 aa Download sequence Send to blast |
MEIEELEEAE GDHTDPVVDC EIAATGNICV IKQVRRKIAR DGPSARIAPN EESAVGRALR 60 QAERHPGQPI FYPHEGTVFS SCEEARDFFN LYSWEIGFGV RFGRSNKNNK GYTTRQDIVC 120 SCEGSPRHDN SASVRTGCKA MVRLLRTSDH GWYISRVDTN HNHKFSEGYA EKKQWLSHSM 180 IDPTTKHFIK KLRDNNITIG RVCSILGVCS SSPMNPVRKE TIRSLCAKVA RENMADDIGK 240 TLKLLTEMKS KDPLMAVRFK LDNEGTIISM LWCSGKNIID YKNFGDAVTF DTTYRTNLYS 300 LPFGIFIGVN SHFQSIIFGG VLLTSEKAED FQWAFENFVV IMEGLAPTTI LTDQCAAMAK 360 AIRVVMPGTR HRWCRWHVLK SSKKRLGKVH GKHKKFKSDF YNLISNELSV EKFENSWNKL 420 IEKYSLRKNK YMRRLYRYRE KWAKPYFMGV FCAGMTSTQR SESANHMLKR YIQKAAPMHL 480 FVSKFNEFLS DRTEQEAREQ HVTKMVSRKM RVGVPIEEHA DRIYTRAMYE KFYDELFEAG 540 KFRVLREEGA QCYTVERARV NSVDEDERYV VYVNGEESIS CQCGFFEHIG MLCRHAIKVL 600 VYLERQEIPR CNIMRRWTKE AIVHKLHEIE TSVGSDVDEM RKKALLLQTL QVVHSNSGID 660 EQMFRNAMDA LRMMPALQTS AGTIMQEDKR TVTFGDLETP AACPPRTMKG GRPASTGLKA 720 WLGRSQKKRS AGRPTRDDET QDWPEEERPA RKKTKRVSDI * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 747 | 756 | RPARKKTKRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG389600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310926.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A1B6Q0S6 | 0.0 | A0A1B6Q0S6_SORBI; Uncharacterized protein | ||||
STRING | Pavir.J32900.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-80 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG389600.1.p |