PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG380900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 299aa MW: 32312.1 Da PI: 8.3898 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.2 | 1.9e-13 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 ++rWT+eE+ l+ +v+++G+g W+tI r R+ ++k++w+++ Pavir.5NG380900.1.p 5 KQRWTPEEEAALKAGVAKHGPGKWRTILRDPDfstllRLRSNVDLKDKWRNL 56 79***********************************99***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.418 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.58E-15 | 2 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-7 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-9 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 3.49E-19 | 6 | 56 | No hit | No description |
SMART | SM00526 | 3.7E-13 | 121 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 2.5E-17 | 122 | 194 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.03E-16 | 123 | 195 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 25.171 | 124 | 192 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 1.3E-10 | 129 | 185 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MGAPKQRWTP EEEAALKAGV AKHGPGKWRT ILRDPDFSTL LRLRSNVDLK DKWRNLSVTA 60 GGYGSREKAR MALKKGKRVV PKLTAEPMDV DANGLGNVHD VVIDAEPLAM SVEPLALEES 120 PEKSVARLDD LILEAIKKLK EPSGSNKAAI AAYIEEQYWP PADFQRLLST KLKALVNAGK 180 LMKVNQKYRI APSSPSLGGI STKVYSAEEM NGENNAKQLT KPQVDADLEK MKGMTKEEAA 240 AFAAKAVAEA EVAIAEAEEA ARIAEAAEND AEAAKAFLEA VTLSMRDRNA ASMMLRAC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.13901 | 0.0 | callus| leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG380900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY271659 | 0.0 | AY271659.1 Zea mays single myb histone 1 (Smh1) mRNA, complete cds. | |||
GenBank | BT042177 | 0.0 | BT042177.1 Zea mays full-length cDNA clone ZM_BFb0153F14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818200.1 | 0.0 | single myb histone 1 | ||||
Swissprot | B4FT40 | 1e-151 | SMH2_MAIZE; Single myb histone 2 | ||||
TrEMBL | A0A3L6SQP0 | 0.0 | A0A3L6SQP0_PANMI; Single myb histone 1-like | ||||
STRING | Pavir.Ea02064.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1324 | 38 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 1e-69 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG380900.1.p |
Publications ? help Back to Top | |||
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