PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG363800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 357aa MW: 37085.6 Da PI: 9.1635 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.7 | 8.9e-08 | 279 | 319 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P a K++ a++L +A +Y++ L Pavir.5NG363800.1.p 279 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 319 69******************966......***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.869 | 270 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-13 | 275 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-13 | 276 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.17E-11 | 276 | 324 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-11 | 278 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-5 | 279 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MTVLERLVLD EALAAAILEL QGIQAPACAG KAPAAGGGVV GEPVAFPSMA TPTPAYADVD 60 ADVLQRQQHR HRHQGAMGMA PDYDLTPATA AVAVTTVPAA FTNAAAAVDS GGLVVDAPVF 120 SGNETGAPGA ATSQRCEEGK GGGRRQRRPN RKRKAAEPSS VPAQESTLCS LLASTTAGEG 180 GIQIAFSTSA QAPAGAKRAK PSVSGSGSSS ISFDGRNAGA NGGVDDPMYE PDTEALAQVK 240 EMIYRAAAMR PVSLGSDDAG ERPRRRNVRI SSDPQTVAAR QRRERISERL RVLQKLVPGG 300 AKMDTASMLD EAANYLRFLK SQVRELQTLD RRNFAANTTT NVNNSIAAPP PPWPGH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 279 | 284 | RQRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG363800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003141 | 1e-142 | AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05. | |||
GenBank | AP003296 | 1e-142 | AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12. | |||
GenBank | AP014957 | 1e-142 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-142 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814680.1 | 1e-173 | transcription factor LATE FLOWERING-like | ||||
TrEMBL | A0A3L6STE1 | 1e-175 | A0A3L6STE1_PANMI; Transcription factor bHLH87-like | ||||
STRING | Pavir.Eb02113.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1546 | 37 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 2e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG363800.1.p |