PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG361500.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 683aa    MW: 73382.9 Da    PI: 5.2259
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG361500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-08475496526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+++  +G C +GdrCkF+H+
  Pavir.5NG361500.2.p 475 ECHNYKNNGMCIRGDRCKFSHV 496
                          6********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.981416443IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-5416441IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038417442IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971445472IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-4445471IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.2E-5446470IPR000571Zinc finger, CCCH-type
SMARTSM003560.023473497IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5475496IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.53475498IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4476495IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MEDALAASPV VPPPAPLAAA AVLTRRRSHL DSASYRTLSR LFSHRLHLQP SSRVGTAPIE  60
GEPAVANPTG GHSGDSAQVP EGADFDWLKD VEKEVADAGG PSLHETVSLA REQLATANPT  120
GDPCEAEAPQ HSHDDVDEVV AVESTCGNTG AVIEELKIGA GTLVVEDDAL KLVKACLETT  180
EVDESVDGAL GNDDGQLLLD AMMTNFTGLI DDVGAGVIPV QTCVVSGGEL QNSKASEDLK  240
QSGGGIEDGE PVSNLDRELN EDGGFEEGEI DGEFQDLDSE ESGDSELVDD DNAEDEKLGG  300
DSVSRGSGAC DHGIQSVNLH PKPEIVGNGH LTLNKDANFR GDEQISVTRA QAVSYDEVVD  360
WNETPLPGNE ATNPGKKRKR SLTEERKAKK TENKRKKRAK QRIADGVKRP KLQHVTKPKK  420
PCHFYDHGKC QQGSKCKFSH DFTPSTKSKP CKHFACGSCL KGDDCPYDHE LSKYECHNYK  480
NNGMCIRGDR CKFSHVMRTT EGTPTQDAKP SDASLAYEKT NRREHTSSQK TSTVHSGEPV  540
TSASTKQQCS ILKNLSGFSI NSQNVSNRIP KGVQFLPFGK SGSNSSSPHL DALSIEKPRN  600
ANATQHQYIG GHEAEKQKNA KKNDQESLLD EKNSSKEATM LPFSDLKKAS LPINSAATSV  660
HTQPEISEAS RIFQEFLFGA GS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375380KKRKRS
2377397RKRSLTEERKAKKTENKRKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.88090.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG361500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4699930.0JX469993.1 Zea mays subsp. mays clone UT3353 C3H-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817940.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_025817941.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_025817942.10.0zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A2T7DKP60.0A0A2T7DKP6_9POAL; Uncharacterized protein
STRINGPavir.Eb02489.1.p0.0(Panicum virgatum)
Publications ? help Back to Top
  1. Noller B,Fischer I
    Photodissociation dynamics of the 2-propyl radical, C3H7.
    J Chem Phys, 2007. 126(14): p. 144302
    [PMID:17444707]
  2. Ali MA,Dillstrom VT,Lai JY,Violi A
    Ab initio investigation of the thermal decomposition of n-butylcyclohexane.
    J Phys Chem A, 2014. 118(6): p. 1067-76
    [PMID:24344976]