PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG359700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 448aa    MW: 46553.9 Da    PI: 4.6426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG359700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-10256300554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h + Er+RR+++N++f++Lr llP++      K +K ++L  A  ++k L
  Pavir.5NG359700.1.p 256 HMMSERKRREKLNDSFHTLRCLLPPC-----SKKDKTTVLINAASFLKTL 300
                          7899*********************9.....6999********9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-15249317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.757251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-14256317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-8256301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.01E-10256305No hitNo description
SMARTSM003536.0E-10257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDEVWCGLDL QQLQAGDPLA APGLHDHDPF WPALADCAAS FLAADTACFG VAGTDLSGGS  60
ASGKEAAAAD GMDTTGFFAE DDSRHHLMPQ EQQPVHSSSS LSSKRSLSVD SGGSWSTFFP  120
LDDAPLAASG IFSSPSPSHP APPAAAQDAL AAADEDEALI SAMMAVISSA SPSSSESSSP  180
PLSQDTTMAA AQAAVVQPPR PASGGNAGHV TVRSSSLAMG PEGTASLTSA AAGGRQQEED  240
AKAAAAGSNN SSQVYHMMSE RKRREKLNDS FHTLRCLLPP CSKKDKTTVL INAASFLKTL  300
EAQVSELEEK NTKLERYVPR EGAGSGATAA AHRRAKVRIS RTGPDERQVS LMVMVMVECD  360
IVDLVLHLLE CLRWMSGVSV LSVDADTYSP QALLKARANI KLQIMDDCDC WDEALFHEAM  420
TTAVHEATSS PSSSSSCAAP APLVAAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259264ERKRRE
2260265RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG359700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819658.10.0putative transcription factor bHLH041
TrEMBLA0A3L6R1U80.0A0A3L6R1U8_PANMI; Uncharacterized protein
STRINGPavir.Eb01823.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-23bHLH family protein