PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG349000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 362aa    MW: 41455.4 Da    PI: 8.4772
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG349000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.21.5e-09987990
                 FAR1  9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle.....leHnHela 90
                         e+GF +++ ++k       ++ ++++C++eg + +++++ + ++r+r ++r gCk  +k++k+ +++ evt++        HnH++ 
  Pavir.5NG349000.1.p  9 EAGFGIKRYHEK-------TYVKWLNCTREGASVSSNSR-VPKERNRGTKRGGCKVGMKLQKHLNSNKEVTSVTievfeALHNHPML 87
                         567777776644.......5699**********999988.9********************99977777776654444489***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105514.6E-26186276IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
SDVLINVEEA GFGIKRYHEK TYVKWLNCTR EGASVSSNSR VPKERNRGTK RGGCKVGMKL  60
QKHLNSNKEV TSVTIEVFEA LHNHPMLTKQ AAKHCYSAKK RDPTYKEFIN QLNDARVPHS  120
SIINLMENIH GGPENMPLTS RDMQNMRADR VCENQANDIS KLLAIFSECK VENPHQQGNY  180
TDFGEVFTFD TTHHTNMYDK PLAMFMGGSN HLKNIVFAFA LLGDETTEIF EWVFSTFKRW  240
MGGTEPRVIL IDQGPVMPDA IKKVFPTSIH RLCRWHKRNF KEVFQSVINH PLTVTEFEQA  300
WEWMLGEFEL RGDPTLQSLY ETRTQWVPAY MKPLYCGIMV STQHGESVNF VVKSAHVGVP  360
R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG349000.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393586.11e-115protein FAR1-RELATED SEQUENCE 5-like
STRINGPavir.Eb02342.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-36FAR1-related sequence 5