PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG343000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 322aa    MW: 34337.7 Da    PI: 7.0148
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG343000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.82e-294108199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklq 84 
                          +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+ll+a+p ++ r+ +++sl+yeA+ r+ +PvyG+vg+++++q
  Pavir.5NG343000.1.p   4 SCNGCRVLRKGCSDACTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAAPADHlRPPVFRSLLYEACGRIVNPVYGSVGLLSSGQ 93 
                          6*****************************************************88877******************************* PP

               DUF260  85 qqleqlkaelallke 99 
                          +q +q+++e++l ++
  Pavir.5NG343000.1.p  94 WQACQAAVEAVLKGH 108
                          *********998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2663110IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-234104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDACT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAAPAD  60
HLRPPVFRSL LYEACGRIVN PVYGSVGLLS SGQWQACQAA VEAVLKGHPV VRVDAASDAA  120
AAPPLLGSRV PGVAAYDIRH VAKDLDAAAA ADLLHIARGG RSRFKRASSS KPHHKAKAGN  180
NRRSSHSPPL RQQQEPEEME PKPMVVEHDE ESAGSHDHHV QGSVDTDVEA GSHVSQAEAE  240
AEPQSHAAPV SSQVLAEDQE EEDVELELTL GLEPAAKRQA KAPSPRCDLN ARGVEPHWPA  300
AGGWTCQPMV NLTSSLRTVQ L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.127121e-89stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG343000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547641e-161EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
GenBankKJ7284041e-161KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817459.11e-146LOB domain-containing protein 40-like
TrEMBLA0A3L6SRN31e-145A0A3L6SRN3_PANMI; Seed specific protein Bn15D17A
STRINGPavir.Eb02390.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-56LOB domain-containing protein 41