PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG322500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 25411 Da PI: 8.804 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.7 | 2.8e-10 | 71 | 118 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f+eL +l + + +K +K++iL A + +++L Pavir.5NG322500.1.p 71 TKACREKLRRDRLNERFNELCAILEPG---KPPKADKVAILSDAARLLSQL 118 5678**********************9...99***************9999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-12 | 61 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.738 | 67 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.4E-8 | 71 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.23E-6 | 71 | 123 | No hit | No description |
SMART | SM00353 | 7.4E-7 | 73 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-12 | 74 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSCGGQAGGW LLDYGLVEEE IQGSEFIYMV DDPAVSSVIL GFDAPRKEDG VQDNTAAKKR 60 SRPESSAPPG TKACREKLRR DRLNERFNEL CAILEPGKPP KADKVAILSD AARLLSQLRA 120 EAQKLKQSNE SLQDSIKSLK AEKSKLRDEK TRLKAEKERL EQMLKGVSAA AAPAPFVPHP 180 AAAAAPSFHP AAFVQAGKFV PYPTYPPPAA FWQWIPPTSL DTSKDPAHWP PVA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3646 | 0.0 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG322500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036372 | 0.0 | BT036372.1 Zea mays full-length cDNA clone ZM_BFb0110A15 mRNA, complete cds. | |||
GenBank | BT040271 | 0.0 | BT040271.1 Zea mays full-length cDNA clone ZM_BFc0075C03 mRNA, complete cds. | |||
GenBank | BT041388 | 0.0 | BT041388.1 Zea mays full-length cDNA clone ZM_BFc0115M23 mRNA, complete cds. | |||
GenBank | BT087616 | 0.0 | BT087616.1 Zea mays full-length cDNA clone ZM_BFb0133E06 mRNA, complete cds. | |||
GenBank | KJ726890 | 0.0 | KJ726890.1 Zea mays clone pUT3433 bHLH transcription factor (bHLH118) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961887.1 | 1e-147 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 3e-60 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | K3Z9B2 | 1e-145 | K3Z9B2_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J15729.1.p | 1e-169 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9386 | 31 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 8e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG322500.1.p |