PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG307700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 422aa MW: 45113.3 Da PI: 6.6377 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.4 | 2.2e-10 | 373 | 419 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 W E+e l ++v+++G+g+Wk I + + gRt+ ++k++w++ Pavir.5NG307700.1.p 373 WCLLEEETLRKGVELYGSGNWKDILSNNPdvfIGRTPVDLKDKWRNM 419 55669****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-13 | 364 | 421 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.937 | 365 | 421 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.07E-14 | 367 | 420 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0079 | 369 | 421 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 8.84E-19 | 371 | 421 | No hit | No description |
Pfam | PF00249 | 8.0E-9 | 372 | 419 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MPRLTPADAT LILDHALGDP SVPAAAVHAL LAALPFPSDP TPRLRRAVLL RRLAADPVSA 60 SALDTLHLLA SLPASPSPCP TPIAAAHIAV AGFLAASAPD FDAAATALFA RPDGRVRRAV 120 AEGGSPALAS DDAIATVDQF EAAVGNSFSQ VVLRGLWGDR AAAEERVREL LAAEWAVTGP 180 SLLEVAAERI VGDGSIQTWR DAKEANRAKF RVLAGEEKTR EILGKLEEST SRVNPISTPE 240 FSKVVDALKT SCAELHSVVE DPLPAAKAAA DEVVASRVDR AVNLNAETGQ PAACGTAGSS 300 VLHEKNNCPN KGRPPSLMDW NPMARTFQWE ESPDPEGSEP ALPRPHLPSP RRIPVSPLPP 360 AENKNKRRRA RKWCLLEEET LRKGVELYGS GNWKDILSNN PDVFIGRTPV DLKDKWRNMM 420 R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG307700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811007.1 | 0.0 | uncharacterized protein LOC112888859 | ||||
TrEMBL | A0A2T7E254 | 0.0 | A0A2T7E254_9POAL; Uncharacterized protein | ||||
STRING | Si006005m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3154 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 2e-12 | TRF-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG307700.1.p |