PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG299600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 287aa    MW: 30184.5 Da    PI: 8.707
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG299600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.1e-13123167347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +W++eE+ +++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qk+
  Pavir.5NG299600.1.p 123 PWSEEEHRQFLAGMEKLGKGDWRGISRNYVTTRTPTQVASHAQKF 167
                          8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.598318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.527116172IPR017930Myb domain
SuperFamilySSF466897.48E-17117173IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-17119171IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.7E-11120163IPR009057Homeodomain-like
SMARTSM007173.6E-10120170IPR001005SANT/Myb domain
CDDcd001672.73E-9123168No hitNo description
PfamPF002492.4E-10123166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MARKCSHCGN HGHNSRTCGL GHSRETMPRQ GGDNGGGGVG GLRLFGVQVH AAGSGGAASM  60
RKSYSMDCLQ LAAPAGCSLV SPSSSSSSSL LLSIEEGLER AATNGYLSDG SARVVAERKK  120
GVPWSEEEHR QFLAGMEKLG KGDWRGISRN YVTTRTPTQV ASHAQKFFLR QSSMGKKKRR  180
SSLFDMVPIC ENNSSISDPP SSEGASTSLS LNVPRHERAE RRTTAFDLNF TEDDGRADVS  240
SASGAGTRPL PAELQPSHHG PAGHGHHCSP LDLELGMSLS TPSVGT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175179KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.146200.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG299600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794481e-154HF679448.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB42 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819826.11e-149transcription factor MYBS3-like
TrEMBLA0A3L6SHL61e-160A0A3L6SHL6_PANMI; Transcription factor MYB1R1-like
STRINGPavir.Eb01957.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-50MYB_related family protein