PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG281700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 79aa MW: 9105.04 Da PI: 6.8081 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30 | 1.2e-09 | 33 | 72 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +T+ E++l + +++ G++ W++Ia +++ gRt++++ +w Pavir.5NG281700.1.p 33 FTEAEEDLVSRMHRLVGNR-WELIAGRIP-GRTAEEVEMFWS 72 9******************.*********.*******99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.2E-7 | 29 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-8 | 32 | 74 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.6E-12 | 33 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.539 | 33 | 75 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.39E-6 | 33 | 71 | No hit | No description |
Pfam | PF00249 | 1.2E-8 | 33 | 72 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MDSRGSSRDK KSKDNDRHEA KEANSTAQNF VDFTEAEEDL VSRMHRLVGN RWELIAGRIP 60 GRTAEEVEMF WSKKHQEK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG281700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU973098 | 4e-76 | EU973098.1 Zea mays clone 393226 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458170.1 | 1e-43 | MYB-like transcription factor ETC3 | ||||
TrEMBL | C5XR42 | 3e-42 | C5XR42_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Eb02165.1.p | 6e-51 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5275 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01060.1 | 6e-21 | CAPRICE-like MYB3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG281700.1.p |