PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG270600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 9686.94 Da PI: 9.025 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.8 | 1.6e-10 | 11 | 55 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ d+l+ +a + + ++ +W+ Iar +g g+++++++ ++ Pavir.5NG270600.2.p 11 AQWTKKQDKLFEQALAVYDKDtpdRWHNIARAVG-GKSAEEVRRYY 55 57********************************.*********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.63E-13 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 11.183 | 8 | 63 | IPR017884 | SANT domain |
SMART | SM00717 | 8.5E-10 | 9 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-8 | 11 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-7 | 12 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.09E-8 | 13 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MASMSMSSSR AQWTKKQDKL FEQALAVYDK DTPDRWHNIA RAVGGKSAEE VRRYYELLEE 60 DIKRIEAGKV PFSAYRCPAG AAPNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-28 | 6 | 80 | 1 | 78 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.11239 | 8e-72 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG270600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969542 | 5e-79 | EU969542.1 Zea mays clone 331755 DNA binding protein mRNA, complete cds. | |||
GenBank | KJ728409 | 5e-79 | KJ728409.1 Zea mays clone pUT6714 MYB-related transcription factor (MYBR41) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814678.1 | 3e-50 | protein RADIALIS-like 3 | ||||
Refseq | XP_025814679.1 | 3e-50 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 1e-29 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A3L6SL31 | 2e-54 | A0A3L6SL31_PANMI; Protein RADIALIS-like 3 | ||||
STRING | Si023770m | 1e-47 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 4e-22 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG270600.2.p |