PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG270600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 114aa    MW: 13374.9 Da    PI: 6.7949
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG270600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.2e-101255344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                          WT+  d+l+ +a + + ++   +W+ Iar +g g+++++++ ++
  Pavir.5NG270600.1.p 12 QWTKKQDKLFEQALAVYDKDtpdRWHNIARAVG-GKSAEEVRRYY 55
                         7********************************.*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.61E-13564IPR009057Homeodomain-like
PROSITE profilePS5129311.183863IPR017884SANT domain
SMARTSM007178.5E-10961IPR001005SANT/Myb domain
PfamPF002493.0E-81155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-71265IPR009057Homeodomain-like
CDDcd001671.90E-71358No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MASMSMSSSR AQWTKKQDKL FEQALAVYDK DTPDRWHNIA RAVGGKSAEE VRRYYELLEE  60
DIKRIEAGKA EAPEDLRTYF GNNHDIQWVW LQNSNSTKWP EHPCTYVNNY RYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-24682179RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.112391e-62leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG270600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9695422e-69EU969542.1 Zea mays clone 331755 DNA binding protein mRNA, complete cds.
GenBankKJ7284092e-69KJ728409.1 Zea mays clone pUT6714 MYB-related transcription factor (MYBR41) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961116.12e-38protein RADIALIS-like 3
SwissprotQ6NNN03e-27RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A3L6SL314e-41A0A3L6SL31_PANMI; Protein RADIALIS-like 3
STRINGPavir.J04159.1.p6e-38(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.17e-20RAD-like 6