PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG269500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 272aa    MW: 28800.8 Da    PI: 8.0867
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG269500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-151360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd+ lv ++ q+G g+W+  ar  g++R +k+c +rw++yl
  Pavir.5NG269500.1.p 13 KGPWTLEEDLVLVGYISQHGEGSWDNLARAAGLNRNGKSCMLRWLNYL 60
                         79********************************************97 PP
2Myb_DNA-binding45.61.6e-1466109146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg  T+ Ed  + ++++ lG++ W+ Ia++++ gRt++++k++w++
  Pavir.5NG269500.1.p  66 RGCITPAEDAAIRELHASLGNR-WSMIAAHLP-GRTDNEIKNYWRT 109
                          6788******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.226860IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-18863IPR009057Homeodomain-like
SuperFamilySSF466893.67E-2911107IPR009057Homeodomain-like
SMARTSM007172.7E-111262IPR001005SANT/Myb domain
PfamPF002491.1E-121360IPR001005SANT/Myb domain
CDDcd001677.96E-91560No hitNo description
PROSITE profilePS5129423.09161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2364113IPR009057Homeodomain-like
SMARTSM007176.0E-1365113IPR001005SANT/Myb domain
PfamPF002491.9E-1266109IPR001005SANT/Myb domain
CDDcd001675.34E-1170109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRMCGGEPA VRKGPWTLEE DLVLVGYISQ HGEGSWDNLA RAAGLNRNGK SCMLRWLNYL  60
RPGVRRGCIT PAEDAAIREL HASLGNRWSM IAAHLPGRTD NEIKNYWRTR IQRRPAPVAS  120
AQQRQPYRAP ATATATAAAM AASEGASSSS SAAASHGSSA AGDWWSYSYV GPNHPEQGAH  180
RSQKSKSVAA AAAAGVDSGS ASSALTSRDS STTTAGVDGH MQTSYSDRYY YSELSSAAAA  240
ADGVKMVDAD SFWNVVDDFW GTLPVPDATL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-2571141107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG269500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281931e-112KJ728193.1 Zea mays clone pUT6467 MYB transcription factor (MYB53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815399.11e-122myb-related protein 340-like
TrEMBLA0A3L6QZT61e-126A0A3L6QZT6_PANMI; Uncharacterized protein
STRINGPavir.Eb01664.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132402633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.13e-53myb domain protein 21