PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG216300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 124aa MW: 14078.5 Da PI: 9.1787 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.8 | 6e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+l++++k++G g+W++ ++ g+ R++k+c++rw +yl Pavir.5NG216300.1.p 14 KGRWTKEEDEILARYIKEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.842 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.28E-22 | 15 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.66E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 4.124 | 62 | 123 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-8 | 65 | 88 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGRWTKE EDEILARYIK EHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI SEEEEEMIIK LHATLGNRCA SFRHPAHLPQ LPGFCVQTRS CAMIIIPAFE 120 GIW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-13 | 12 | 92 | 5 | 84 | B-MYB |
1h8a_C | 4e-13 | 12 | 92 | 25 | 104 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3471 | 1e-147 | root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG216300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679411 | 1e-128 | HF679411.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB5 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105092.1 | 4e-55 | R2R3 Myb transcription factor MYB-IF35 | ||||
Swissprot | P27898 | 8e-51 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | A0A3L6FA18 | 9e-54 | A0A3L6FA18_MAIZE; Myb-related protein P | ||||
TrEMBL | Q84U76 | 9e-54 | Q84U76_MAIZE; MYB transcription factor | ||||
STRING | Pavir.J12840.1.p | 4e-86 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 6e-50 | myb domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG216300.1.p |