PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG213400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 338aa    MW: 36886.4 Da    PI: 4.7417
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG213400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +grWT+eEde+l++++k+ G g+W++ ++  g+ R++k+c++rw +yl
  Pavir.5NG213400.1.p 14 KGRWTKEEDEILARYIKEQGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                         79******************************99************97 PP
2Myb_DNA-binding54.43e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ ++eE+e ++++++ lG++ W++Ia +++ gRt++++k++w+++l
  Pavir.5NG213400.1.p  67 RGNISEEEEEMIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                          7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.818961IPR017930Myb domain
SuperFamilySSF466891.47E-2811108IPR009057Homeodomain-like
SMARTSM007173.0E-121363IPR001005SANT/Myb domain
PfamPF002496.8E-151461IPR001005SANT/Myb domain
CDDcd001678.50E-111661No hitNo description
PROSITE profilePS5129425.56362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2565115IPR009057Homeodomain-like
SMARTSM007172.2E-1766114IPR001005SANT/Myb domain
PfamPF002491.9E-1567112IPR001005SANT/Myb domain
CDDcd001676.27E-977112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTKE EDEILARYIK EQGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SEEEEEMIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLRRRAADFC  120
DGVVVNVDLS KLPGGGKRRG GRVSRGVMAA AKAGKEKKVK EKEKAKGKSK VAEAEQQQQH  180
EQVKEDDDMA VSTPSSHSQP CATAQSEEQA QASASGLTSD DGPEEDPLAL SEEMMSALLG  240
PGSPKLEVGP DGWCMDSDSG PSVVVDSDSG PTGDVAQELG DKAIMDWDLM GLDISTAGDM  300
WDPLVWDYAD MDVVVPGGGH QQPQEEVMSD LFFLDYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24121155107B-MYB
1h8a_C6e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.119230.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG213400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819210.10.0myb-related protein P-like
TrEMBLA0A2T7DNC50.0A0A2T7DNC5_9POAL; Uncharacterized protein
STRINGSi002107m1e-180(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-70myb domain protein 12