PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG205300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 616aa    MW: 66065 Da    PI: 6.7945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG205300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.8e-16368414455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Pavir.5NG205300.2.p 368 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 414
                          5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.64E-17361418No hitNo description
SuperFamilySSF474591.83E-20362423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-20368422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-13368414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MSDGNEFAEL LWENGHAVVH GRRKQPPQTS FPPFTCGAAS SSRAQEKQPG GDPVALLKTG  60
GVFGAGGLAP SLHDFSSGLD ATRDNGDLDD TVPWIHYPII EEDTAEPALA GSYSPDFFSE  120
LHAAAAAATN LGSLPPPVQH TNTNRSNPVV TTSREPEPSK ESHRLPIPGP ATWPEPQAEF  180
AATKQPRLGG SGEGLMNFSL FSRPAAMARA SLQNAQRPPQ TGTDKASNVT TSTRVESTVL  240
QSARGARAAP GFTEQRTAWP QQPKEVRFSC TAAPTAGNLQ QEMPPDRLAS MALQKKVETR  300
KAPEAAVATS SVCSGNGAGT GNDESWRQHK RKSQAECSAS QDDDLEDESG GMRRSGSRGT  360
KRSRTAEVHN LSERRRRDRI NEKMRALQEL IPNCNKIDKA SMLDEAIEYL KTLQLQVQMM  420
SMGSGLCIPP MLLPPTMQHL QIPPMAHFPH LGMGLGYRMG VFDMNSTPAV PFPSMPGAHF  480
PCPMIPGPPP QGLGMPGRNT VPMFGLPGQA IHPPASSVQP FPYLAGLPVR PNLPPQVSAA  540
MANMVQQQDV ATQQQQNMNN EARRGANTGD PELQTILQVE NRHFSVPSSA QTESGQFLDS  600
GSNRTDTAER NGPET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372377ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.47323e-60callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG205300.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817917.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like
SwissprotQ0JNI90.0PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A3L6R2670.0A0A3L6R267_PANMI; Transcription factor APG-like isoform X1
STRINGPavir.Ea01048.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-44phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]