PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG205300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 621aa    MW: 66643.7 Da    PI: 6.9172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG205300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.8e-16373419455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Pavir.5NG205300.1.p 373 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 419
                          5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.68E-17366423No hitNo description
SuperFamilySSF474591.83E-20367428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-13373419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-20373427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17375424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MYVGCRSDGN EFAELLWENG HAVVHGRRKQ PPQTSFPPFT CGAASSSRAQ EKQPGGDPVA  60
LLKTGGVFGA GGLAPSLHDF SSGLDATRDN GDLDDTVPWI HYPIIEEDTA EPALAGSYSP  120
DFFSELHAAA AAATNLGSLP PPVQHTNTNR SNPVVTTSRE PEPSKESHRL PIPGPATWPE  180
PQAEFAATKQ PRLGGSGEGL MNFSLFSRPA AMARASLQNA QRPPQTGTDK ASNVTTSTRV  240
ESTVLQSARG ARAAPGFTEQ RTAWPQQPKE VRFSCTAAPT AGNLQQEMPP DRLASMALQK  300
KVETRKAPEA AVATSSVCSG NGAGTGNDES WRQHKRKSQA ECSASQDDDL EDESGGMRRS  360
GSRGTKRSRT AEVHNLSERR RRDRINEKMR ALQELIPNCN KIDKASMLDE AIEYLKTLQL  420
QVQMMSMGSG LCIPPMLLPP TMQHLQIPPM AHFPHLGMGL GYRMGVFDMN STPAVPFPSM  480
PGAHFPCPMI PGPPPQGLGM PGRNTVPMFG LPGQAIHPPA SSVQPFPYLA GLPVRPNLPP  540
QVSAAMANMV QQQDVATQQQ QNMNNEARRG ANTGDPELQT ILQVENRHFS VPSSAQTESG  600
QFLDSGSNRT DTAERNGPET *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377382ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.47323e-60callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG205300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817917.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like
SwissprotQ0JNI90.0PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A3L6R2670.0A0A3L6R267_PANMI; Transcription factor APG-like isoform X1
STRINGPavir.Ea01048.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-44phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]