PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG204900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 425aa    MW: 47184.7 Da    PI: 6.8733
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG204900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.3e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l + ++++G g+W+t+++  g+ R++k+c++rw +yl
  Pavir.5NG204900.1.p 14 KGLWSPEEDEKLMNHITKHGHGCWSTVPKLAGLQRCGKSCRLRWINYL 61
                         678*******************************************97 PP
2Myb_DNA-binding47.15.5e-1567109145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          rg++++eE++l++++++ lG++ W+ Ia +++ gRt++++k+ w+
  Pavir.5NG204900.1.p  67 RGAFSQEEEDLIIELHAVLGNR-WSQIATRLP-GRTDNEIKNLWN 109
                          89********************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.396961IPR017930Myb domain
SuperFamilySSF466891.8E-2912108IPR009057Homeodomain-like
SMARTSM007176.5E-121363IPR001005SANT/Myb domain
PfamPF002495.4E-151461IPR001005SANT/Myb domain
CDDcd001671.49E-101761No hitNo description
PROSITE profilePS5129425.16762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2565116IPR009057Homeodomain-like
SMARTSM007172.5E-1366114IPR001005SANT/Myb domain
PfamPF002498.7E-1467109IPR001005SANT/Myb domain
CDDcd001671.40E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSTV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQEEEDLIIE LHAVLGNRWS QIATRLPGRT DNEIKNLWNS SIKKKLRQKG  120
IDPNTHKPLA EVDSKAAPTI STERTSESSD DDPSSGGAIR NLSHILSETA QSPELLPGLG  180
KHRKETTGLA HLRVPPKELF LDQLVSGHDN LPSCRSTGPI PNFPFQQLIC YSNELGSKPG  240
GSTNSLWFNQ NESSCSTVST VMAPVSPSTL STSTRLNRSP EKPHSGGTGI QSTQFYWDAT  300
NPSSSSSKGS SGNNSLGFEL QSTSSILENS IFPWTDLSPD KNSHLEEELK WPDLLHETFT  360
DTPATMQNLS QSLYEDVVKA ESQFNMEGLC AAWSQNLQPQ QHLQVVSDLY DKDLQRMSLS  420
FENI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.14230.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG204900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816206.10.0transcription factor MYB61-like
TrEMBLA0A3L6SJH80.0A0A3L6SJH8_PANMI; Transcription factor MYB86
STRINGPavir.Eb01178.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-88myb domain protein 61