PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.5NG202900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 299aa MW: 30965.7 Da PI: 9.7676 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.2 | 9.1e-06 | 196 | 236 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P +++ a++L +A Y+k L Pavir.5NG202900.1.p 196 ARLRRERVSERLRVLQRLVPGG-----SRMDTASMLDEAASYLKFL 236 599*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.215 | 187 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-12 | 193 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.8E-11 | 193 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.58E-10 | 193 | 241 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.2E-9 | 193 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 299 aa Download sequence Send to blast |
MGLDTADVLP SVVAGAAEDS LLDPFVYAPN VVAVAEEPAQ TPASNTAFSG YSGSTTGGGG 60 NGNISSGESN TCGSGGGYDT DVASPCAVSR TALLQTTAVV PPSKRKLGNE PPRRRRRRPA 120 SRSRGGASTS MPQEGPPPAG YEPDSEAIAQ VKEMIYRAAA MRPVHQLVCG AAEPPSQTRP 180 RRKNVRISSD PQTVAARLRR ERVSERLRVL QRLVPGGSRM DTASMLDEAA SYLKFLKSQL 240 KALERANPSN GSLLQSYTGG LGGGATSAGT VLAFGRESAI GGYVKSNRDI STCGVSDI* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 103 | 117 | KRKLGNEPPRRRRRR |
2 | 111 | 118 | PRRRRRRP |
3 | 112 | 117 | RRRRRR |
4 | 178 | 182 | RPRRK |
5 | 196 | 201 | RLRRER |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.5NG202900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT065889 | 1e-130 | BT065889.1 Zea mays full-length cDNA clone ZM_BFc0179C07 mRNA, complete cds. | |||
GenBank | BT066302 | 1e-130 | BT066302.1 Zea mays full-length cDNA clone ZM_BFc0192A04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806661.1 | 1e-129 | transcription factor LATE FLOWERING-like | ||||
Swissprot | A0A0P0WQ90 | 1e-72 | LF_ORYSJ; Transcription factor LATE FLOWERING | ||||
TrEMBL | A0A1E5W6W2 | 1e-129 | A0A1E5W6W2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J21430.1.p | 1e-167 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1546 | 37 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21330.1 | 6e-28 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.5NG202900.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|