PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG192800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 331aa MW: 36712.2 Da PI: 7.7986

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG192800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.9	2.9e-10	44	86	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L Pavir.5NG192800.1.p 44 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 86 56889*************************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.9E-8	36	89	No hit	No description
SMART	SM00338	4.2E-8	42	105	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	44	88	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.0E-7	45	86	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.94E-7	46	89	No hit	No description
PROSITE pattern	PS00036	0	49	64	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.6E-34	128	203	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MADASPRTET STDDTDDNHG LEPGTGALVV ASDSSDRSKD KHEDQKTLRR LAQNREAARK 60 SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGIFISSSV DQSHSMSGNG ALAFDMEYAR 120 WLEEHNRQIS ELRAGVTAHA SDSDLRSVVD KIMSHYDEIF RLKGNAAKAD VFHVLSGMWK 180 TPAERCFLWL GGFRPSEVLK LLSTQLEPLT EQQLSGISNL QQSSQQAEDA LSQGMEALQQ 240 SLAETLAGSL SSSGSTGNVA NYMGQMAMAM GKLGTLENFL RQADNLRLQT LQQMQRILTT 300 RQAARALLVI SDYSSRLRAL SSLWLARPKE *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.9370	0.0	callus\| leaf\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG192800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT036137	0.0	BT036137.1 Zea mays full-length cDNA clone ZM_BFb0097M11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816990.1	0.0	transcription factor TGA2.3
Swissprot	P23923	0.0	HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBL	A0A2S3HW59	0.0	A0A2S3HW59_9POAL; Uncharacterized protein
STRING	Pavir.Eb01160.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-152	TGACG motif-binding factor 6

Link Out ? help Back to Top
Phytozome	Pavir.5NG192800.1.p

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143]