PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG185700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 322aa MW: 34048.7 Da PI: 8.5124 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.9e-17 | 63 | 108 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+ + gR++k+c++rw++ Pavir.5NG185700.1.p 63 RGHWRPAEDAKLKELVAQHGPQNWNLIAENLD-GRSGKSCRLRWFNQ 108 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.9 | 4.6e-18 | 115 | 158 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ Pavir.5NG185700.1.p 115 RRAFSEEEEERLLAAHRAYGNR-WALIARLFP-GRTDNAVKNHWHV 158 678*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.637 | 58 | 109 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-14 | 62 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 63 | 108 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.36E-28 | 63 | 156 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-26 | 64 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.00E-13 | 66 | 107 | No hit | No description |
PROSITE profile | PS51294 | 26.916 | 110 | 164 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 114 | 162 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-15 | 115 | 158 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-20 | 117 | 162 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.92E-8 | 126 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MVHEMACFSG RAPPAAALSP FHDEHEPAVV SEEVYHGHAE GLEDASCGRG HGAGGGLGKL 60 CTRGHWRPAE DAKLKELVAQ HGPQNWNLIA ENLDGRSGKS CRLRWFNQLD PRINRRAFSE 120 EEEERLLAAH RAYGNRWALI ARLFPGRTDN AVKNHWHVLA ARKHREQSGA IRRRKPSSSC 180 TATTSSSHFA PTPAVVGHRH DRSPPVAFHA GGAHAQHGVR TEAAAATTRA CSGGESEGSA 240 STCTTNLSLG SAGAAAAPCF YQSSNDDAAG YDVAPRAAAF APGARSAFSV PSPARHRAAA 300 SDDGCGKLAR PFYDFLGVGA T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-32 | 61 | 163 | 5 | 107 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During anther development, expressed in anther vacuolar tissue from stage 9 to stage 13. {ECO:0000269|PubMed:20305120}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root vascular tissue, primordia of lateral roots, leaf collar, and veins of lemma, palea and pistil. {ECO:0000269|PubMed:20305120}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG185700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964855 | 1e-133 | EU964855.1 Zea mays clone 282116 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817646.1 | 1e-169 | transcription factor CSA-like isoform X2 | ||||
Swissprot | Q5NBM8 | 1e-86 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A2T7DNV6 | 1e-171 | A0A2T7DNV6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J16832.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-51 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG185700.1.p |