PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG175800.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 519aa    MW: 56714.6 Da    PI: 6.2814
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG175800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.61.5e-39137196261
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k++
  Pavir.5NG175800.3.p 137 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKNA 196
                          7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-31134194IPR003851Zinc finger, Dof-type
PfamPF027013.9E-32139195IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.891141195IPR003851Zinc finger, Dof-type
PROSITE patternPS013610143179IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MKVDMPQEKD NEMKVDTLQE KGDEMKIDTP QEKGNEMKVD MPQEEKGGEM KYDASQKEHD  60
GEIKVDAQQE QKDEQMKVGA SSMTENIQPG TLPTSDHNKK DISQVNSTED KAASDPKGES  120
EKTSNEESGQ DKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT  180
MRNVPVGAGR RKSKNASLHY RQLLMAPDCM LGSRVDMSKS VLPEALVSPP SASIQPTNRN  240
ETVLKFGPEV PLCESMASAL NIDEQNVKNP GSAPRGENRE DNSCASSVTS YNGLPENMVH  300
VDKNGAPIYC NGVASLPQYY LGTPFMYPWS VGWNNLPVMV PGKNMPESAS ASESCSTSSA  360
SAPWMTSPMM PASRLPGPAF PYPLVPPALW GCLSGWPATT WNIPWIRTNG CVSPSSSNSS  420
CSGNGSPTLG KHSRDSNPLK EEKKEKSLWV PKTLRIDDPD EAAKSSIWAT LGIKPGDPGT  480
FKPFQSKAES KGQKSDTAQV LQANPAALSR LQSFQESS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.10970.0callus| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG175800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2995600.0KF299560.1 Miscanthus sacchariflorus clone Msac_GC_7 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815271.10.0cyclic dof factor 2-like
TrEMBLA0A2T7DP350.0A0A2T7DP35_9POAL; Uncharacterized protein
STRINGPavir.Eb01078.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-68cycling DOF factor 2