PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG175800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 545aa    MW: 59430.4 Da    PI: 4.7346
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG175800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.51.6e-39200259261
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k++
  Pavir.5NG175800.2.p 200 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKNA 259
                          7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-31197257IPR003851Zinc finger, Dof-type
PfamPF027014.1E-32202258IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.891204258IPR003851Zinc finger, Dof-type
PROSITE patternPS013610206242IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MSDQKDPGIK LFGRVIPLAP EPAPGTTETE EPPCHDQPPE ELQPRALEAA AADEDQHIEE  60
DSEMKVDMPQ EKDNEMKVDT LQEKGDEMKI DTPQEKGNEM KVDMPQEEKG GEMKYDASQK  120
EHDGEIKVDA QQEQKDEQMK VGASSMTENI QPGTLPTSDH NKKDISQVNS TEDKAASDPK  180
GESEKTSNEE SGQDKTLKKP DKILPCPRCN SMDTKFCYYN NYNVNQPRHF CKNCQRYWTA  240
GGTMRNVPVG AGRRKSKNAS LHYRQLLMAP DCMLGSRVDM SKSVLPEALV SPPSASIQPT  300
NRNETVLKFG PEVPLCESMA SALNIDEQNV KNPGSAPRGE NREDNSCASS VTSYNGLPEN  360
MVHVDKNGAP IYCNGVASLP QYYLGTPFMY PWSVGWNNLP VMVPGKNMPE SASASESCST  420
SSASAPWMTS PMMPASRLPG PAFPYPLVPP ALWGCLSGWP ATTWNIPWIR TNGCVSPSSS  480
NSSCSDEAAK SSIWATLGIK PGDPGTFKPF QSKAESKGQK SDTAQVLQAN PAALSRLQSF  540
QESS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.10970.0callus| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG175800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2995600.0KF299560.1 Miscanthus sacchariflorus clone Msac_GC_7 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815271.10.0cyclic dof factor 2-like
TrEMBLA0A2T7DP350.0A0A2T7DP35_9POAL; Uncharacterized protein
STRINGPavir.Eb01078.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-45cycling DOF factor 2