PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG165000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 731aa    MW: 83771 Da    PI: 5.5035
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG165000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.61e-18174254290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          f n Y+  +GF ++k +++k+      +k tfvC+k+gk  e+ +  +++rr++a +rt+C+ k++vk+   g+we+  +++eHnH+l+
  Pavir.5NG165000.1.p 174 FLNVYGLVTGFVMKKGTNYKH------KKITFVCNKSGKMPERGTG-NRKRRSNAIDRTECRMKVTVKLV-AGRWEIRAVNKEHNHPLV 254
                          8899***************99......5678************999.9**********************.9***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-15174254IPR004330FAR1 DNA binding domain
PfamPF105512.6E-24377469IPR018289MULE transposase domain
PROSITE profilePS509669.235660696IPR007527Zinc finger, SWIM-type
SMARTSM005754.1E-4671698IPR006564Zinc finger, PMZ-type
PfamPF044346.0E-4672693IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MEGKCKQAVL SLPAQTMTER NLKSDQECET LMTVEKESTM AILATEESSR KETNLEERYG  60
IMVGAENKDG QSGNPRAEES FQQAHLLNNS EIDMLSELQA PEAAETFSQE HEQDNGSLVG  120
NDDGEEDINE FQNDGDEAGD GEEDYFFPTP EDAEQARPPE IGMIFATLQD AHRFLNVYGL  180
VTGFVMKKGT NYKHKKITFV CNKSGKMPER GTGNRKRRSN AIDRTECRMK VTVKLVAGRW  240
EIRAVNKEHN HPLVGLPSLT KFFISHKYMS EEERILSRIL QESKIKPAEI MEIFRKLRSR  300
LKNIPVQKMD NCMKQSERQA VTKNTDIEST LEHLRRFQKE QPGFIYAINT DNGNTVRSVF  360
WTDALARLNY ALYGDFISFD TSYTTTENNM LFAPLIGING HGKAIVFGCA LLENEMAETL  420
TWLFRTFLDV MDGKKPITII THQGSAMQKS TAEAFPDASH RFSMWHMMRE AAAEFGGSMA  480
NRSGLQAELT RLVTNSLTAE EFEDGWKAML QKYDAASNAH LNLMYQTRLM WVPVYFKHVF  540
CPFIRSSEGS DNTNSIFKDD VPLQDTIENL IYQYDIFQKE VACMEHGYRS QSTPKIPMYC  600
TRQPIERQAA ELYTVGLFLK FQKELLDASA FNVFETDKGR IYTVKKTLDY EEAEFLSDSF  660
PIEVDMKTNM FNCVCSKFER DGILCCHVLR LFTQFGINEI PQHYIKQRWT KKYREEGLLI  720
AQRKQDWIVS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG165000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684348.10.0protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBLA0A0A8Y9M90.0A0A0A8Y9M9_ARUDO; Uncharacterized protein
STRINGPavir.Eb00857.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-82FAR1-related sequence 5