PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG162200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 351aa    MW: 39329.9 Da    PI: 8.3846
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG162200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1661.3e-51251561128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF P+dee++++yL +kv+++++++ +++ e+d +k+ePw+Lp+k+k +ekewyfF k+d+ky+tg+r+nratk+gyWkatgkdk
  Pavir.5NG162200.1.p  25 LPPGFRFYPSDEEIITFYLMPKVHQSSFTC-NAMGEIDFNKTEPWELPNKAKLGEKEWYFFYKKDRKYPTGTRANRATKDGYWKATGKDK 113
                          79***************************9.89***************99999************************************* PP

                  NAM  91 evlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++        +l+g+kktLvfykgrap g+ktdWvmhe+rl
  Pavir.5NG162200.1.p 114 EIYRDvvgpaLPQLIGMKKTLVFYKGRAPGGKKTDWVMHEFRL 156
                          ****8776665566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-5920192IPR003441NAC domain
PROSITE profilePS5100556.12825192IPR003441NAC domain
PfamPF023654.0E-2626156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSTRTMGDRQ EQPKEISSGG GSLELPPGFR FYPSDEEIIT FYLMPKVHQS SFTCNAMGEI  60
DFNKTEPWEL PNKAKLGEKE WYFFYKKDRK YPTGTRANRA TKDGYWKATG KDKEIYRDVV  120
GPALPQLIGM KKTLVFYKGR APGGKKTDWV MHEFRLQGSN RLPCPTSSST SLTTMKSSNS  180
KDDWVVCRVF HKATGKKRTS ALPQYNLDTT GHGIDERSTP MAMPQQFPML SDFTMNLQVS  240
YYSIANASSS LVSPMMPPMP DMGSIGIQMN NTLFRDLMAI MPPMSYLQMG MGIASTDNVM  300
AARNNGLSSM VSQNDNGMNP DQTIAIEMSY MVSAAQEYVA TIDMDSIWEY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-512319815171NO APICAL MERISTEM PROTEIN
1ut4_B3e-512319815171NO APICAL MERISTEM PROTEIN
1ut7_A3e-512319815171NO APICAL MERISTEM PROTEIN
1ut7_B3e-512319815171NO APICAL MERISTEM PROTEIN
3swm_A3e-512319818174NAC domain-containing protein 19
3swm_B3e-512319818174NAC domain-containing protein 19
3swm_C3e-512319818174NAC domain-containing protein 19
3swm_D3e-512319818174NAC domain-containing protein 19
3swp_A3e-512319818174NAC domain-containing protein 19
3swp_B3e-512319818174NAC domain-containing protein 19
3swp_C3e-512319818174NAC domain-containing protein 19
3swp_D3e-512319818174NAC domain-containing protein 19
4dul_A3e-512319815171NAC domain-containing protein 19
4dul_B3e-512319815171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG162200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682349.11e-149protein CUP-SHAPED COTYLEDON 1
SwissprotQ9FLJ29e-69NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A3L6R0D60.0A0A3L6R0D6_PANMI; Protein CUP-SHAPED COTYLEDON 1-like
STRINGPavir.Eb00976.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.24e-70NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]