PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG152300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 369aa    MW: 40857.6 Da    PI: 5.0757
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG152300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.91.5e-47221521129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          +ppGfrF+P+dee++++yL++kv+++++++  ++ evd++++ePw+Lp k++   +ew +F++rd+ky++g r nratk+gyWkatgkdk
  Pavir.5NG152300.1.p  22 MPPGFRFNPSDEEIITFYLTPKVQQRSFTC-AAMGEVDLNRTEPWELPGKANI-GEEW-YFCQRDHKYQKGLRMNRATKDGYWKATGKDK 108
                          79**************************99.78***************66555.3555.689**************************** PP

                  NAM  91 evlskkgel.....vglkktLvfykgrapkgektdWvmheyrle 129
                          e++++++ +     +g+kktLvfy+grap+g+kt+W+m+eyrle
  Pavir.5NG152300.1.p 109 EIYRATTGVvlpelIGMKKTLVFYTGRAPRGKKTSWIMNEYRLE 152
                          ****8444456666****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-5213188IPR003441NAC domain
PROSITE profilePS5100550.8722188IPR003441NAC domain
PfamPF023651.7E-2523151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGDQHQQQEP QVMHVGGGGL EMPPGFRFNP SDEEIITFYL TPKVQQRSFT CAAMGEVDLN  60
RTEPWELPGK ANIGEEWYFC QRDHKYQKGL RMNRATKDGY WKATGKDKEI YRATTGVVLP  120
ELIGMKKTLV FYTGRAPRGK KTSWIMNEYR LEGDDRLPYP AANSISTATM KSSSASKEEW  180
VVCRVFHKIA GIKKAPTSPP YNNTMDNIGI DESSIHMPLP LEFPMLPEFT MDQSSTHMPL  240
SPEFPMLPNF TMDPAGIYNS TTDLSSLSVA DVIPPSIAGM GIDTPQMNGA LLGNSMVIAP  300
QMPFHHQTNI GTVDASGFMA APQGMPSLMV SQDTGMSLDQ TNAVEISSMV SIVPESTTTM  360
DMDFLWRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-402019418174NAC domain-containing protein 19
3swm_B3e-402019418174NAC domain-containing protein 19
3swm_C3e-402019418174NAC domain-containing protein 19
3swm_D3e-402019418174NAC domain-containing protein 19
3swp_A3e-402019418174NAC domain-containing protein 19
3swp_B3e-402019418174NAC domain-containing protein 19
3swp_C3e-402019418174NAC domain-containing protein 19
3swp_D3e-402019418174NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG152300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815672.10.0NAC domain-containing protein 87-like
TrEMBLA0A2T7DPV80.0A0A2T7DPV8_9POAL; Uncharacterized protein
STRINGPavir.Eb00898.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.29e-67NAC domain containing protein 80