PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG146700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 299aa MW: 30917.5 Da PI: 6.7409 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27 | 7.8e-09 | 216 | 257 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ L++l+P+ +K++ +++LekA+ Y+k Lq Pavir.5NG146700.1.p 216 AKVRRERIAEKLKVLQDLVPNG-----TKVDLVTMLEKAITYVKFLQ 257 589*****************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.322 | 207 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-12 | 208 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-12 | 209 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.50E-11 | 209 | 261 | No hit | No description |
SMART | SM00353 | 2.5E-10 | 213 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.7E-6 | 217 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MAQASKRSAM QQPQLRPVMY GDEPSSMSLE LFGYHGGVVV DGDEGEGGSA AAALSLQLAF 60 DDDSFKHGAA SAGGDYYSSW AGYGGSGASS SSSSSVLSFE QAGSGGHHHH LGDDGCALWM 120 DVAAAGMVEH PPPHQHGSAC RFGLVSPGSS ADDDAGGLHI QGLGSDQPPA KATNKRARPD 180 GEVQAAAAAK KQCGGGRKSK AKAAPAPTKD PQSVAAKVRR ERIAEKLKVL QDLVPNGTKV 240 DLVTMLEKAI TYVKFLQLQV KVLAADEFWP AQGGKAPDLS QVKDALDAIL SSQQYPHK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG146700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819067.1 | 1e-161 | transcription factor bHLH83-like | ||||
Swissprot | Q9FJ00 | 9e-49 | BH086_ARATH; Putative transcription factor bHLH086 | ||||
TrEMBL | A0A2S3HX40 | 1e-160 | A0A2S3HX40_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb00817.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1412 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 6e-45 | ROOT HAIR DEFECTIVE6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG146700.1.p |
Publications ? help Back to Top | |||
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