PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG143300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 389aa MW: 43079.7 Da PI: 7.672

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG143300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.8	1.1e-49	19	151	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF P+dee++++yL +kv+++++++ +i evd ++ ePw+Lp k+k +ek+wyfF +d+ky+ g+r nratk+gyWkatgkdk Pavir.5NG143300.1.p 19 LPPGFRFYPNDEEIITFYLIPKVHRRNFTC-IAIGEVDFHRNEPWELPGKAKMGEKDWYFFYLKDRKYPMGSRMNRATKDGYWKATGKDK 107 79************************99.88***********99999********************************* PP NAM 91 evlskkgel.....vglkktLvfykgrapkgektdWvmheyrle 129 e++++++++ vg+kktL+fykgrap+gekt+Wvmhe+rle Pavir.5NG143300.1.p 108 EIYRATTKKvipllVGMKKTLIFYKGRAPRGEKTNWVMHEFRLE 151 8666678999*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-53	16	187	IPR003441	NAC domain
PROSITE profile	PS51005	51.861	19	187	IPR003441	NAC domain
Pfam	PF02365	1.1E-24	20	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MGDHPDQPQG RSGSDGLHLP PGFRFYPNDE EIITFYLIPK VHRRNFTCIA IGEVDFHRNE 60 PWELPGKAKM GEKDWYFFYL KDRKYPMGSR MNRATKDGYW KATGKDKEIY RATTKKVIPL 120 LVGMKKTLIF YKGRAPRGEK TNWVMHEFRL EGSDMLPYPA SSSTSTTCLK SSTSDVDEWV 180 VGHVFHKTTG MKRTPALPSY NLAITDDGTD QGSIPMPTPL PFPMLSDFIM DPIASYYSTL 240 GTSSSLVPPV MSPLVGMSSI GLHMKNNLFG NPMAMVPPMS IYHQMGMGIV GASGCMDVLK 300 SGPSLMMSQK GTLMDHGQTN VSEISQTMSA AVGASSFMDA LKSGPSQMVS LKDTMMDHDQ 360 INIAEISQMV SAAPEYVPFI DMYGFCKY*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MGDHPDQPQG RSGSDGLHLP PGFRFYPNDE EIITFYLIPK VHRRNFTCIA IGEVDFHRNE  60
PWELPGKAKM GEKDWYFFYL KDRKYPMGSR MNRATKDGYW KATGKDKEIY RATTKKVIPL  120
LVGMKKTLIF YKGRAPRGEK TNWVMHEFRL EGSDMLPYPA SSSTSTTCLK SSTSDVDEWV  180
VGHVFHKTTG MKRTPALPSY NLAITDDGTD QGSIPMPTPL PFPMLSDFIM DPIASYYSTL  240
GTSSSLVPPV MSPLVGMSSI GLHMKNNLFG NPMAMVPPMS IYHQMGMGIV GASGCMDVLK  300
SGPSLMMSQK GTLMDHGQTN VSEISQTMSA AVGASSFMDA LKSGPSQMVS LKDTMMDHDQ  360
INIAEISQMV SAAPEYVPFI DMYGFCKY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-45	17	193	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-45	17	193	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-45	17	193	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-45	17	193	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-45	17	193	18	174	NAC domain-containing protein 19
3swm_B	1e-45	17	193	18	174	NAC domain-containing protein 19
3swm_C	1e-45	17	193	18	174	NAC domain-containing protein 19
3swm_D	1e-45	17	193	18	174	NAC domain-containing protein 19
3swp_A	1e-45	17	193	18	174	NAC domain-containing protein 19
3swp_B	1e-45	17	193	18	174	NAC domain-containing protein 19
3swp_C	1e-45	17	193	18	174	NAC domain-containing protein 19
3swp_D	1e-45	17	193	18	174	NAC domain-containing protein 19
4dul_A	1e-45	17	193	15	171	NAC domain-containing protein 19
4dul_B	1e-45	17	193	15	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG143300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682349.1	1e-154	protein CUP-SHAPED COTYLEDON 1
TrEMBL	A0A2T7DQ20	0.0	A0A2T7DQ20_9POAL; Uncharacterized protein
STRING	Pavir.Eb00839.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	2e-66	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Pavir.5NG143300.1.p