PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG140200.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 387aa MW: 41460 Da PI: 8.6469 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.4 | 6.9e-05 | 275 | 313 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Pavir.5NG140200.3.p 275 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 313 7788899*********998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.29 | 263 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-11 | 273 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.75E-5 | 273 | 317 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-8 | 277 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MRMTPFKNLL VSSERNCAGH HYHSDELEVL LSAQGHNHSH HAASPLLPHQ LSSLLMMQDL 60 GFQWSNCSFA DTSSVPMNGQ QDGHRKIKEE EPLISSRSSC AGTAAISYHD VDVDGGCLPA 120 MAAADLDGTV LPSVNISRPQ QQLMKAWPAA PPPLPGDAFE ILASSRLCKT LLLSQASSVL 180 LHNGMPLLRS EHVPCGPPAH PQGPSGDNYK LQMGAAPLAN GGGRHWSAEH DAAPACQKAV 240 RPAVVPPQSQ SQAPSLKKPR VESRSSTVVP SFKVRKEKLG DRIAALQQLV SPFGKTDTAS 300 VLMEAIGYIK FLQGQVETLS GPYLKSSRNK KPSRTTQRGA SNANGGELEE TRLNLRSRGL 360 CLVPLSCTSY VTNENGVWAP PNFRGN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG140200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU950257 | 3e-43 | EU950257.1 Zea mays clone 484112 mRNA sequence. | |||
GenBank | EU950352 | 3e-43 | EU950352.1 Zea mays clone 489974 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816405.1 | 0.0 | transcription factor bHLH110 | ||||
TrEMBL | A0A2S3HWX8 | 0.0 | A0A2S3HWX8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb01016.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 8e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG140200.3.p |