PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG140200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 423aa    MW: 45071.8 Da    PI: 7.8356
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG140200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.27.8e-053113491255
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Pavir.5NG140200.1.p 311 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 349
                          7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.29299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-11309360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-5309353No hitNo description
Gene3DG3DSA:4.10.280.102.1E-8313356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MMASSSSSNL SDHLVQDDLP WPSSSSLPFA PAPHSAIIGG SHQWSQQTQT LNCAGHHYHS  60
DELEVLLSAQ GHNHSHHAAS PLLPHQLSSL LMMQDLGFQW SNCSFADTSS VPMNGQQDGH  120
RKIKEEEPLI SSRSSCAGTA AISYHDVDVD GGCLPAMAAA DLDGTVLPSV NISRPQQQLM  180
KAWPAAPPPL PGDAFEILAS SRLCKTLLLS QASSVLLHNG MPLLRSEHVP CGPPAHPQGP  240
SGDNYKLQMG AAPLANGGGR HWSAEHDAAP ACQKAVRPAV VPPQSQSQAP SLKKPRVESR  300
SSTVVPSFKV RKEKLGDRIA ALQQLVSPFG KTDTASVLME AIGYIKFLQG QVETLSGPYL  360
KSSRNKKPSR TTQRGASNAN GGELEETRLN LRSRGLCLVP LSCTSYVTNE NGVWAPPNFR  420
GN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG140200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9502574e-43EU950257.1 Zea mays clone 484112 mRNA sequence.
GenBankEU9503524e-43EU950352.1 Zea mays clone 489974 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816405.10.0transcription factor bHLH110
TrEMBLA0A2S3HWX80.0A0A2S3HWX8_9POAL; Uncharacterized protein
STRINGPavir.Eb01016.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-45bHLH family protein