PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG126700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 263aa    MW: 27209.1 Da    PI: 6.3044
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG126700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.1e-102271946
                         TTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqk 46
                         + g+ W++Ia++++ gRt++++k++w++
  Pavir.5NG126700.2.p  2 HMGR-WSRIAQHLP-GRTDNEIKNYWRT 27
                         5667.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.969133IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-12228IPR009057Homeodomain-like
CDDcd001678.41E-8327No hitNo description
SuperFamilySSF466894.6E-7432IPR009057Homeodomain-like
PfamPF002491.2E-7427IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MHMGRWSRIA QHLPGRTDNE IKNYWRTRVQ KQARQLRVDA NSAVFRDAVR CYWMPRLLEK  60
MAATSAHQVD PAALLHPAHI AAGVGGSASP PVHGGQHDAT SAPGPGSGYG HHQSYPVDPS  120
PSTSTSGCSG STSAAALPPV PCFSELSWVD QYGPYADLDG AGAFDSAALG SLGLDGLDLG  180
PADGDVYPDS TTLLDYLNSA CTGGGAMMTM MGGGNAPHSS CGAIMGGHDG DYGPPSSWRT  240
DELCQAAARK LGGDHHQWGG GI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.51170.0callus| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG126700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794273e-86HF679427.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB21 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814736.11e-118transcription factor MYB2-like
TrEMBLA0A3L6QWI11e-132A0A3L6QWI1_PANMI; Trichome differentiation protein GL1-like
STRINGPavir.Eb00654.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-27myb domain protein 62