PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG126700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 357aa    MW: 38159.8 Da    PI: 6.9088
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG126700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-162572148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd ll +++  +G g+W++ ar+ g++Rt+k+c++rw++yl
  Pavir.5NG126700.1.p 25 RGPWTLEEDNLLMNYIVCHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 72
                         89********************************************97 PP
2Myb_DNA-binding53.65.2e-1778121146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Pavir.5NG126700.1.p  78 RGNLTPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 121
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1242072IPR017930Myb domain
SuperFamilySSF466891.46E-3022119IPR009057Homeodomain-like
SMARTSM007176.6E-132474IPR001005SANT/Myb domain
PfamPF002493.8E-142572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-222679IPR009057Homeodomain-like
CDDcd001677.69E-112772No hitNo description
PROSITE profilePS5129426.28173127IPR017930Myb domain
SMARTSM007171.5E-1577125IPR001005SANT/Myb domain
PfamPF002497.0E-1678121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2480126IPR009057Homeodomain-like
CDDcd001674.07E-1382121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSQRKGAMAA VTSSKHEEEM MELRRGPWTL EEDNLLMNYI VCHGEGRWNL LARCSGLKRT  60
GKSCRLRWLN YLKPDIKRGN LTPEEQLLIL ELHSKWGNRW SRIAQHLPGR TDNEIKNYWR  120
TRVQKQARQL RVDANSAVFR DAVRCYWMPR LLEKMAATSA HQVDPAALLH PAHIAAGVGG  180
SASPPVHGGQ HDATSAPGPG SGYGHHQSYP VDPSPSTSTS GCSGSTSAAA LPPVPCFSEL  240
SWVDQYGPYA DLDGAGAFDS AALGSLGLDG LDLGPADGDV YPDSTTLLDY LNSACTGGGA  300
MMTMMGGGNA PHSSCGAIMG GHDGDYGPPS SWRTDELCQA AARKLGGDHH QWGGGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-26221261104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.51170.0callus| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG126700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794270.0HF679427.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB21 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814736.10.0transcription factor MYB2-like
TrEMBLA0A3L6QWI10.0A0A3L6QWI1_PANMI; Trichome differentiation protein GL1-like
STRINGPavir.Eb00654.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-80myb domain protein 62