PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG125600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 293aa    MW: 31419.4 Da    PI: 7.4283
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG125600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.37.7e-314106198
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C+++p++     p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++
  Pavir.5NG125600.1.p   4 SCNGCRVLRKGCSDNCAIRPCLqwirnPDSQGNATVFLAKFYGRAGLINLINAGPENVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallk 98 
                          ql+q+++e +l++
  Pavir.5NG125600.1.p  94 QLCQSAVESVLRG 106
                          ******9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.6E-911289IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.6533109IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRN PDSQGNATVF LAKFYGRAGL INLINAGPEN  60
VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQSAV ESVLRGMPIA QPPPAATAVP  120
PLRTCDIRHV AMRQAADQGA VAAAALHRMA NSSRGQFKRS GAHRSAAAGC DSAIELVFSQ  180
PSAAMLADVR QARPLNWAPR QPSQEYSAGS HDAIPETHSN AASVDTVEVS HVSQSEPEPP  240
RESDERADGL DLTLGLSPTT HNTEPSDFDD EQPCHRGEPV KLGLAMADSR AR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG125600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1005021e-143FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818644.11e-180LOB domain-containing protein 42-like
SwissprotQ9M8861e-69LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A3L6R3710.0A0A3L6R371_PANMI; LOB domain-containing protein 42
STRINGPavir.J11724.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-65LOB domain-containing protein 41