PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG124200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 328aa    MW: 35119.4 Da    PI: 4.6126
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG124200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.7e-14114152346
                  AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaa 46 
                          y+GVr +k +g+W+AeIr  +     + kr +lg+f+t  +Aa aa
  Pavir.5NG124200.1.p 114 YRGVRLRK-WGKWAAEIRNpF-----TgKRQWLGTFDT-AGAASAA 152
                          9*****99.**********55.....45**********.8777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-17113159IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-14113158IPR016177DNA-binding domain
PROSITE profilePS5103216.753113171IPR001471AP2/ERF domain
PfamPF008472.6E-8113152IPR001471AP2/ERF domain
SMARTSM003801.7E-11113176IPR001471AP2/ERF domain
PRINTSPR003677.6E-8114125IPR001471AP2/ERF domain
CDDcd000184.24E-16114145No hitNo description
PRINTSPR003677.6E-8136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAPLNHQQIL IKKALAKKPK SKRISGFGLK PSASLLKARP QQQPPAPVMS RRRVRVLFED  60
PDATDSDSDD EGEAGTARSK RFSFEMFVGK APAKPVLLAA TVAASTSGGT PESYRGVRLR  120
KWGKWAAEIR NPFTGKRQWL GTFDTAGAAS AAYLSASGSF AEEKRRRRGQ PVPASSPATS  180
PSASPTASSS SSTTAAPFAH PSPSSVLEST KPAPMPESPE PVATPVPPSS ESAQLPDDPE  240
FYQDLLRGLQ LPDIDPMDFR AGLDALDVSD APFCLDEEQD LLFGDIADEE MDDLDLLDNI  300
NDVFPELPGC DLGRGMDDFL QTVDFCV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.3350.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG124200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817249.11e-176ethylene-responsive transcription factor ERF118-like
TrEMBLA0A3L6QX331e-176A0A3L6QX33_PANMI; Uncharacterized protein
STRINGPavir.J16910.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.13e-11ERF family protein