PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG116200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 216aa MW: 23126.8 Da PI: 4.4338 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 52.8 | 8.6e-17 | 94 | 177 | 18 | 100 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflvdivprde 100 + +lP+ rik+i+++d d+k++++ea l++ a elf+ l+ ++ a rrt++ + + aa ++ + dfl+d p +e Pavir.5NG116200.1.p 94 RPTLPVGRIKRIMRVDRDIKKVTSEATLLIAAATELFLGSLASGAYTAAARRGRRTVRAAHVRAAArAHRPTADFLLDCLPAEE 177 4579**********************************************************88762567799*******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.84E-17 | 94 | 174 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.9E-20 | 95 | 158 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.8E-15 | 96 | 158 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MATAAAEPTV AMEEPLGKED ERIDEPAEAM EQIAEEREQA GEPAEAMGQI EEEQVEPGDP 60 MEQVEEQHVE AAEPMEQVGV EQEEAEAEEG TSLRPTLPVG RIKRIMRVDR DIKKVTSEAT 120 LLIAAATELF LGSLASGAYT AAARRGRRTV RAAHVRAAAR AHRPTADFLL DCLPAEEEAP 180 RSRPAAGSAG GGGGREAKPL PRGTRRIDAL FQKVT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG116200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726958 | 1e-114 | KJ726958.1 Zea mays clone pUT3656 CCAAT-HAP5 transcription factor (CA5P15) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819164.1 | 7e-81 | nuclear transcription factor Y subunit C-6 isoform X1 | ||||
TrEMBL | A0A2S3HYE0 | 2e-79 | A0A2S3HYE0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J29091.1.p | 1e-144 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13342 | 26 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 1e-08 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG116200.1.p |